Dear all, I have a .tsv count matrix from a single cell experiment and I want to analyze it using SCANPy package in Python. When I import my data using following command
I can see my data is stored as follow:
AnnData object with n_obs × n_vars = 4057 × 66882 obs: 'n_genes' var: 'n_cells'
which I assume is not correct and my var should correspond to my genes and obs to my cells. I am not so familiar with Python or Scanpy. does anyone has a suggestion ?