Question: Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
0
gravatar for Pin.Bioinf
11 weeks ago by
Pin.Bioinf230
Malaga
Pin.Bioinf230 wrote:

Hello,

I want to compare the CNAs and SNPs in a tumor from same patient in different stages, so I have 3 tumor samples (tims 1, 2 , 3). Can I run varScan to do this or it needs to be just tumor/normal with varScan? Is there a better tool for this?

Thank you a lot.

snp cnv varscan cna • 138 views
ADD COMMENTlink modified 9 weeks ago by Biostar ♦♦ 20 • written 11 weeks ago by Pin.Bioinf230

VarScan for tumor only files

ADD REPLYlink written 9 weeks ago by toralmanvar750
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1442 users visited in the last hour