Question: Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
gravatar for Pin.Bioinf
11 weeks ago by
Pin.Bioinf230 wrote:


I want to compare the CNAs and SNPs in a tumor from same patient in different stages, so I have 3 tumor samples (tims 1, 2 , 3). Can I run varScan to do this or it needs to be just tumor/normal with varScan? Is there a better tool for this?

Thank you a lot.

snp cnv varscan cna • 138 views
ADD COMMENTlink modified 9 weeks ago by Biostar ♦♦ 20 • written 11 weeks ago by Pin.Bioinf230

VarScan for tumor only files

ADD REPLYlink written 9 weeks ago by toralmanvar750
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