Question: Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
gravatar for Pin.Bioinf
7 months ago by
Pin.Bioinf250 wrote:


I want to compare the CNAs and SNPs in a tumor from same patient in different stages, so I have 3 tumor samples (tims 1, 2 , 3). Can I run varScan to do this or it needs to be just tumor/normal with varScan? Is there a better tool for this?

Thank you a lot.

snp cnv varscan cna • 217 views
ADD COMMENTlink modified 7 months ago by Biostar ♦♦ 20 • written 7 months ago by Pin.Bioinf250

VarScan for tumor only files

ADD REPLYlink written 7 months ago by toralmanvar770
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