Hi, I´m very new to all the NGS processing stuff, but I installed fastq screen successfully and indexed 3 genomes using BWA (human, E. Coli and a custom made one). So far everything went well, but when I try to run fastq screen it gives me this error;
Using '/home/usr/Software/fastq_screen_v0.13.0/bwa/bwa' as BWA path Skipping DATABASE 'Human' since no BWA index was found at '/home/usr/Genomes/Homo_sapiens/GRCh38_genomic.fa.sa'
despite the path in the config file should be the right one, and I can´t see what else could be the problem (obviously there are all files which should be produced by the bwa index command).
This is the path in the config file for the human genome;
Maybe any of you knows how I could solve this problem?