Question: Making nice plots based on the different metrics from VCF file
1
gravatar for Denis
11 months ago by
Denis140
Denis140 wrote:

Hi all, I have a multi sample VCF file and i'd like to make a numerous plots with different metrics of the mentioned file for some report/presentation. I use bcftools for that, but wondering if there are any other useful tools or R functions, etc. for my purposes? Thanks!

snp R genome • 693 views
ADD COMMENTlink modified 4 weeks ago by gb1.2k • written 11 months ago by Denis140
3
gravatar for pwwang
4 weeks ago by
pwwang30
pwwang30 wrote:

Try this out: https://github.com/pwwang/vcfstats

ADD COMMENTlink written 4 weeks ago by pwwang30
1

It looks promising. Defenitely worth to try.

ADD REPLYlink written 4 weeks ago by Denis140

Thanks, let me know if you have any questions in using it.

ADD REPLYlink written 20 days ago by pwwang30
2
gravatar for Pierre Lindenbaum
11 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum124k wrote:

I wrote http://lindenb.github.io/jvarkit/VcfStatsJfx.html

ADD COMMENTlink written 11 months ago by Pierre Lindenbaum124k
1
gravatar for gb
4 weeks ago by
gb1.2k
gb1.2k wrote:

Another option: https://vcf.iobio.io

ADD COMMENTlink written 4 weeks ago by gb1.2k
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