Question: Making nice plots based on the different metrics from VCF file
1
gravatar for Denis
21 months ago by
Denis190
Denis190 wrote:

Hi all, I have a multi sample VCF file and i'd like to make a numerous plots with different metrics of the mentioned file for some report/presentation. I use bcftools for that, but wondering if there are any other useful tools or R functions, etc. for my purposes? Thanks!

snp R genome • 1.6k views
ADD COMMENTlink modified 11 months ago by gb1.9k • written 21 months ago by Denis190
3
gravatar for pwwang
11 months ago by
pwwang30
pwwang30 wrote:

Try this out: https://github.com/pwwang/vcfstats

ADD COMMENTlink written 11 months ago by pwwang30
1

It looks promising. Defenitely worth to try.

ADD REPLYlink written 11 months ago by Denis190

Thanks, let me know if you have any questions in using it.

ADD REPLYlink written 10 months ago by pwwang30
2
gravatar for Pierre Lindenbaum
21 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum130k wrote:

I wrote http://lindenb.github.io/jvarkit/VcfStatsJfx.html

ADD COMMENTlink written 21 months ago by Pierre Lindenbaum130k
1
gravatar for gb
11 months ago by
gb1.9k
gb1.9k wrote:

Another option: https://vcf.iobio.io

ADD COMMENTlink written 11 months ago by gb1.9k
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