Question: Ensembl variation ancestral allele data
0
gravatar for Scott
6 months ago by
Scott80
Canada
Scott80 wrote:

Hi. I am looking to download ancestral allele data for human. Ensembl has a link on their FTP page (http://useast.ensembl.org/info/data/ftp/index.html) under comparative genomics called "Ancestral Alleles" but it appears to be dead. I would be interested in knowing if these files are still there and in a description of the data. Thanks.

ensembl snp ancestral • 290 views
ADD COMMENTlink modified 6 months ago by Emily_Ensembl18k • written 6 months ago by Scott80
1

do you want what is under: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/supporting/ancestral_alignments/ ?

ADD REPLYlink written 6 months ago by Pierre Lindenbaum120k

This would be okay, but I really need hg38. Ensembl has this in various formats, but if the files in question are FASTA files, it would be very convenient. Thanks!

ADD REPLYlink written 6 months ago by Scott80
1

Tagging: Emily_Ensembl

ADD REPLYlink written 6 months ago by genomax68k
1
gravatar for Emily_Ensembl
6 months ago by
Emily_Ensembl18k
EMBL-EBI
Emily_Ensembl18k wrote:

I'm not sure why that has been disabled in the current version, but you can get it in an archive.

ADD COMMENTlink written 6 months ago by Emily_Ensembl18k
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