Question: Ensembl variation ancestral allele data
0
gravatar for Scott
10 weeks ago by
Scott80
Canada
Scott80 wrote:

Hi. I am looking to download ancestral allele data for human. Ensembl has a link on their FTP page (http://useast.ensembl.org/info/data/ftp/index.html) under comparative genomics called "Ancestral Alleles" but it appears to be dead. I would be interested in knowing if these files are still there and in a description of the data. Thanks.

ensembl snp ancestral • 168 views
ADD COMMENTlink modified 10 weeks ago by Emily_Ensembl17k • written 10 weeks ago by Scott80
1

do you want what is under: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/supporting/ancestral_alignments/ ?

ADD REPLYlink written 10 weeks ago by Pierre Lindenbaum116k

This would be okay, but I really need hg38. Ensembl has this in various formats, but if the files in question are FASTA files, it would be very convenient. Thanks!

ADD REPLYlink written 10 weeks ago by Scott80
1

Tagging: Emily_Ensembl

ADD REPLYlink written 10 weeks ago by genomax62k
1
gravatar for Emily_Ensembl
10 weeks ago by
Emily_Ensembl17k
EMBL-EBI
Emily_Ensembl17k wrote:

I'm not sure why that has been disabled in the current version, but you can get it in an archive.

ADD COMMENTlink written 10 weeks ago by Emily_Ensembl17k
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