I have just run meme-chip with the following script:
meme-chip -oc outputfile -dna -meme-minw 8 -meme-maxw 20 -meme-mod anr -meme-nmotifs 100 -db motif_databases/CIS-BP/Homo_sapiens.meme -db motif_databases/HUMAN/._HOCOMOCOv11_core_HUMAN_mono_meme_format.meme -db motif_databases/JASPAR/JASPAR2018_CORE_vertebrates_redundant.meme inputfile.fa
However, I seem to be getting very few motifs that are enriched at all. Could this be something to do with the databases that I have chosen, or an option that I am missing?
I keep getting that
dreme exited with error code 1
Any help would be greatly appreciated as I am fairly new to this!