Question: Unusual results from meme-chip
gravatar for kdecoteau
4 days ago by
kdecoteau0 wrote:


I have just run meme-chip with the following script:

meme-chip -oc outputfile -dna -meme-minw 8 -meme-maxw 20 -meme-mod anr -meme-nmotifs 100 -db motif_databases/CIS-BP/ -db 
motif_databases/HUMAN/ -db motif_databases/JASPAR/  inputfile.fa

However, I seem to be getting very few motifs that are enriched at all. Could this be something to do with the databases that I have chosen, or an option that I am missing?

I keep getting that dreme exited with error code 1

Any help would be greatly appreciated as I am fairly new to this!

ADD COMMENTlink modified 4 days ago • written 4 days ago by kdecoteau0

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ADD REPLYlink modified 4 days ago • written 4 days ago by Sej Modha3.9k
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