Question: Unusual results from meme-chip
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gravatar for kdecoteau
4 days ago by
kdecoteau0
kdecoteau0 wrote:

Hi,

I have just run meme-chip with the following script:

meme-chip -oc outputfile -dna -meme-minw 8 -meme-maxw 20 -meme-mod anr -meme-nmotifs 100 -db motif_databases/CIS-BP/Homo_sapiens.meme -db 
motif_databases/HUMAN/._HOCOMOCOv11_core_HUMAN_mono_meme_format.meme -db motif_databases/JASPAR/JASPAR2018_CORE_vertebrates_redundant.meme  inputfile.fa

However, I seem to be getting very few motifs that are enriched at all. Could this be something to do with the databases that I have chosen, or an option that I am missing?

I keep getting that dreme exited with error code 1

Any help would be greatly appreciated as I am fairly new to this!

ADD COMMENTlink modified 4 days ago • written 4 days ago by kdecoteau0
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ADD REPLYlink modified 4 days ago • written 4 days ago by Sej Modha3.9k
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