Question: Convert NCBI SRA data to gene expression data
gravatar for Dylan Wang
7 months ago by
Dylan Wang40
Dylan Wang40 wrote:

I have downloaded some SRA data from NCBI(GEO)? I converted SRA data into fastq format. I want to know how to convert fastq format to Gene Expression Matrix using STAR, RSEM?

rna-seq alignment ncbi genome • 305 views
ADD COMMENTlink written 7 months ago by Dylan Wang40
gravatar for genomax
7 months ago by
United States
genomax69k wrote:

Mapping of reads with STAR : (consult STAR manual for latest changes).
RNAseq expression analysis using DESeq2:
RSEM Tutorial:

ADD COMMENTlink modified 7 months ago • written 7 months ago by genomax69k
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