Question: Convert NCBI SRA data to gene expression data
gravatar for Dylan
9 weeks ago by
Dylan30 wrote:

I have downloaded some SRA data from NCBI(GEO)? I converted SRA data into fastq format. I want to know how to convert fastq format to Gene Expression Matrix using STAR, RSEM?

rna-seq alignment ncbi genome • 151 views
ADD COMMENTlink written 9 weeks ago by Dylan30
gravatar for genomax
9 weeks ago by
United States
genomax62k wrote:

Mapping of reads with STAR : (consult STAR manual for latest changes).
RNAseq expression analysis using DESeq2:
RSEM Tutorial:

ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by genomax62k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 887 users visited in the last hour