Question: Bootstrap function biopython
0
gravatar for mdsiddra
18 months ago by
mdsiddra30
mdsiddra30 wrote:

I have used bioppython 1.72 modules to generate a Maximum Parsimony tree. I need to know if anyone can help me how to use bootstrap function with biopython.? How can I use this function to evaluate my tree?

biopython • 588 views
ADD COMMENTlink modified 18 months ago by Eric T.2.6k • written 18 months ago by mdsiddra30

Hello, can biopython create phylogeny trees? I checked manual for biopython 1.70 didn't see this can create phylogeny tree.

ADD REPLYlink written 18 months ago by MatthewP660

Yes, it does. You must post this as question to get complete answer.

ADD REPLYlink written 18 months ago by mdsiddra30
0
gravatar for Eric T.
18 months ago by
Eric T.2.6k
San Francisco, CA
Eric T.2.6k wrote:

Yes, try Bio.Phylo.Consensus.bootstrap_trees and .bootstrap_consensus to get bootstrapped tree replicates and the consensus tree, respectively.

ADD COMMENTlink written 18 months ago by Eric T.2.6k

@Eric T. Please have a look here, https://github.com/biopython/biopython/issues/1887 Its urgent.

ADD REPLYlink written 18 months ago by mdsiddra30
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