Question: Bootstrap function biopython
0
gravatar for mdsiddra
8 months ago by
mdsiddra30
mdsiddra30 wrote:

I have used bioppython 1.72 modules to generate a Maximum Parsimony tree. I need to know if anyone can help me how to use bootstrap function with biopython.? How can I use this function to evaluate my tree?

biopython • 329 views
ADD COMMENTlink modified 7 months ago by Eric T.2.5k • written 8 months ago by mdsiddra30

Hello, can biopython create phylogeny trees? I checked manual for biopython 1.70 didn't see this can create phylogeny tree.

ADD REPLYlink written 7 months ago by MatthewP210

Yes, it does. You must post this as question to get complete answer.

ADD REPLYlink written 7 months ago by mdsiddra30
0
gravatar for Eric T.
7 months ago by
Eric T.2.5k
San Francisco, CA
Eric T.2.5k wrote:

Yes, try Bio.Phylo.Consensus.bootstrap_trees and .bootstrap_consensus to get bootstrapped tree replicates and the consensus tree, respectively.

ADD COMMENTlink written 7 months ago by Eric T.2.5k

@Eric T. Please have a look here, https://github.com/biopython/biopython/issues/1887 Its urgent.

ADD REPLYlink written 7 months ago by mdsiddra30
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