Question: load/parse cwl using Java
1
gravatar for pr80ik
4 months ago by
pr80ik20
pr80ik20 wrote:

I would like to parse CWL file into java model classes. I'm using cwl-avro project (cwlavro version: 2.0.4.2) as the model classes. How can I parse the cwl file so that I get back an instance of _io.cwl.avro.Workflow.Workflow_ class

cwl • 278 views
ADD COMMENTlink modified 3 months ago by denis.yuen90 • written 4 months ago by pr80ik20
1

Probably best to make an issue at https://github.com/common-workflow-language/cwlavro/issues/new and tag https://github.com/denis-yuen to request his assistance

ADD REPLYlink written 4 months ago by Michael R. Crusoe1.4k
1

reported as github issue

ADD REPLYlink written 4 months ago by pr80ik20
0
gravatar for denis.yuen
3 months ago by
denis.yuen90
OICR
denis.yuen90 wrote:

FYI, https://github.com/common-workflow-language/cwlavro/issues/16#issuecomment-450888290

Note, be alert as to which version of the cwlavro you're using, I've been a bit messy with version numbers. 2.0.4 (what we currently use) let's you switch between cwltool (installed locally on the system) and bunny for cwl -> json processing (but is mostly tested with cwltool) 2.0.7 (experimental) let's you use cwltool within heterodon (doesn't require Python dependencies directly)

Can probably discuss more what that means on GitHub.

ADD COMMENTlink written 3 months ago by denis.yuen90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1125 users visited in the last hour