Question: hicAggregateContacts use with different HiC matrix format
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gravatar for gregoire.stik
2.2 years ago by
gregoire.stik0 wrote:

Hi, I was wondering if it is possible to use hicAggregateContacts with HiC matrices from an external program. I have my in-house normalized matrices and I would like to know if there is a way to use hicAggregateContacts tools. Many thanks

hicexplorer • 1.1k views
ADD COMMENTlink modified 2.2 years ago by vivekbhr630 • written 2.2 years ago by gregoire.stik0
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gravatar for vivekbhr
2.2 years ago by
vivekbhr630
Germany
vivekbhr630 wrote:

Hi. It depends on the format of your matrices. We provide a tool to convert between various HiC formats and HiCExplorer format. If you have your matrices in .cool format, or a homer-like format (all-to-all matrix), this would work.

ADD COMMENTlink written 2.2 years ago by vivekbhr630
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