I was wondering if it is possible to use hicAggregateContacts with HiC matrices from an external program.
I have my in-house normalized matrices and I would like to know if there is a way to use hicAggregateContacts tools.
Hi. It depends on the format of your matrices. We provide a tool to convert between various HiC formats and HiCExplorer format. If you have your matrices in .cool format, or a homer-like format (all-to-all matrix), this would work.