hicAggregateContacts use with different HiC matrix format
1
0
Entering edit mode
2.8 years ago

Hi, I was wondering if it is possible to use hicAggregateContacts with HiC matrices from an external program. I have my in-house normalized matrices and I would like to know if there is a way to use hicAggregateContacts tools. Many thanks

hicexplorer • 1.3k views
ADD COMMENT
0
Entering edit mode
2.8 years ago
vivekbhr ▴ 640

Hi. It depends on the format of your matrices. We provide a tool to convert between various HiC formats and HiCExplorer format. If you have your matrices in .cool format, or a homer-like format (all-to-all matrix), this would work.

ADD COMMENT

Login before adding your answer.

Traffic: 2151 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6