Question: How should I input CNV files and mutation files into R to run ABSOLUTE? Respectively or integrated?
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gravatar for 948077241
3 months ago by
9480772410
9480772410 wrote:

I am now trying to run the ABSOLUTE, but I am quite confused how should I input my files (both CNV files and mutation files). Should I integrate them into one plain text? Please give me an example!

absolute • 187 views
ADD COMMENTlink modified 10 weeks ago by Kevin Blighe39k • written 3 months ago by 9480772410

Please draft your posts to follow etiquette on scientific forums. Exclamation points are not good etiquette, and in the context you've used them, can come across as rude and demanding. Also, imperative statements (ones asking people to do something, such as "give me XYZ" or "answer quickly"), are also not good etiquette. The content should ask questions politely, not make demands.

I understand if there's a language barrier, but online communication needs a lot of care.

ADD REPLYlink written 10 weeks ago by RamRS20k
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gravatar for Kevin Blighe
10 weeks ago by
Kevin Blighe39k
Republic of Ireland
Kevin Blighe39k wrote:

No need for us to give you examples. The examples can be found after a quick search with a search engine: http://software.broadinstitute.org/cancer/software/genepattern/modules/docs/absolute/2#exampledata

Good luck.

Kevin

ADD COMMENTlink modified 10 weeks ago • written 10 weeks ago by Kevin Blighe39k
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