Question: How should I input CNV files and mutation files into R to run ABSOLUTE? Respectively or integrated?
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gravatar for Laven9
9 months ago by
Laven90
Laven90 wrote:

I am now trying to run the ABSOLUTE, but I am quite confused how should I input my files (both CNV files and mutation files). Should I integrate them into one plain text? Please give me an example!

absolute • 396 views
ADD COMMENTlink modified 8 months ago by Kevin Blighe48k • written 9 months ago by Laven90

Please draft your posts to follow etiquette on scientific forums. Exclamation points are not good etiquette, and in the context you've used them, can come across as rude and demanding. Also, imperative statements (ones asking people to do something, such as "give me XYZ" or "answer quickly"), are also not good etiquette. The content should ask questions politely, not make demands.

I understand if there's a language barrier, but online communication needs a lot of care.

ADD REPLYlink written 8 months ago by RamRS24k
0
gravatar for Kevin Blighe
8 months ago by
Kevin Blighe48k
Kevin Blighe48k wrote:

No need for us to give you examples. The examples can be found after a quick search with a search engine: http://software.broadinstitute.org/cancer/software/genepattern/modules/docs/absolute/2#exampledata

Good luck.

Kevin

ADD COMMENTlink modified 8 months ago • written 8 months ago by Kevin Blighe48k
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