Question: difference between mummer --mum and delta-filter -r -q
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gravatar for ersgupta
22 months ago by
ersgupta0
Potsdam, Germany
ersgupta0 wrote:

I want to run genome-genome alignment using nucmer. The plan was to do nucmer with --maxmatch (takes very long) and then do delta-filter to retain 1-1 alignments.

My question is, if I run nucmer with --mum option, isn't that same as applying delta-filter 1-1 on maxmatch output? Am I missing something here?

ADD COMMENTlink modified 22 months ago • written 22 months ago by ersgupta0
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