How to compare haplotype with a list of nucleotide variations
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5.3 years ago
seta ★ 1.9k

Hi all,

I am trying to predict blood group from whole genome sequencing data (human); I found that this database is helpful. To this end, after variant calling and phasing vcf file, the haplotypes should be extracted and compared with information in the above-mentioned database, yes? Could you please tell me how I can compare the haplotypes with the list of nucleotide variations (available in the database) to get the corresponding blood group?

Please kindly share me any suggestions and comments.

Thanks

blood group prediction haplotype NGS • 849 views
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