Entering edit mode
5.3 years ago
e.roohparvar
•
0
I was wondering how can I convert the "Dot-brocket" format of RNA's secondary structure to the "Shapiro" format ?
this format: ...(((((((....((((((((....(((((((.............))))..)))...)))))).)).(((((((...((((((((.(....)))))))))..))))))).)))))))... to this format: (((((((((((H13)S4)B2)S3)I7)S6)B1)S2)((((((H4)S1)B1)S8)I5)S7)M6)S7)E6)
Is there any program I could use for this conversion? Or Is there any way I could get access to all RNAs secondary structure in "Shapiro" format?