Entering edit mode
5.3 years ago
IrisChang
▴
20
Hi,
I am trying to use Pfam, but everytime I got the same message below.
Can't locate Moose.pm in @INC (@INC contains: /usr/lib64/qt-3.3/bin /home/program/apache-maven-3.3.9/bin /usr/local/bin /usr/bin /usr/local/sbin /usr/sbin /home/ching/program/perl.sr /home/ching/.local/bin /home/ching/bin /home/ching/program/trinityrnaseq-2.2.0 /home/ching/program/samtools-1.3.1 /home/ching/program/bowtie2-2.2.9/ /home/ching/program/bwa-0.7.15/ /home/ching/program/picard-tools-2.5.0/ /home/program/ncbi-blast-2.3.0+/bin/ /home/program/bowtie2-2.2.9/ /home/program/tophat-2.1.1.Linux_x86_64/ /home/program/cufflinks-2.2.1.Linux_x86_64/ /home/program/Trimmomatic-0.36/ //home/ching/program/hmmer/hmmer-3.2.1/src /home/ching/program/Pfam/PfamScan/ /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /home/ching/program/Pfam/PfamScan//Bio/Pfam/HMM/HMMResultsIO.pm line 50.
BEGIN failed--compilation aborted at /home/ching/program/Pfam/PfamScan//Bio/Pfam/HMM/HMMResultsIO.pm line 50.
Compilation failed in require at /home/ching/program/Pfam/PfamScan//Bio/Pfam/Scan/PfamScan.pm line 33.
BEGIN failed--compilation aborted at /home/ching/program/Pfam/PfamScan//Bio/Pfam/Scan/PfamScan.pm line 33.
Compilation failed in require at /home/ching/program/Pfam/PfamScan/pfam_scan.pl line 8.
BEGIN failed--compilation aborted at /home/ching/program/Pfam/PfamScan/pfam_scan.pl line 8.`
So I installed Moose by the command line
cpan
install Moose
But I got the error message
Running make install
[sudo] password for Irischang:
ching is not in the sudoers file. This incident will be reported.
ETHER/Moose-2.2011.tar.gz
sudo /usr/bin/make install -- NOT OK
Failed during this command:
RJBS/Test-Fatal-0.014.tar.gz : install NO
ETHER/Module-Metadata-1.000033.tar.gz : install NO
LEONT/CPAN-Meta-Check-0.014.tar.gz : install NO
RJBS/Sub-Install-0.928.tar.gz : install NO
DAGOLDEN/File-pushd-1.016.tar.gz : install NO
HAARG/Test-Needs-0.002005.tar.gz : install NO
ETHER/Test-Warnings-0.026.tar.gz : install NO
TOKUHIROM/Test-Requires-0.10.tar.gz : install NO
VPIT/Variable-Magic-0.62.tar.gz : install NO
ETHER/B-Hooks-EndOfScope-0.24.tar.gz : install NO
RIBASUSHI/namespace-clean-0.27.tar.gz : install NO
ETHER/Test-CleanNamespaces-0.24.tar.gz : install NO
RJBS/Sub-Exporter-0.987.tar.gz : install NO
PEVANS/Scalar-List-Utils-1.50.tar.gz : install NO
HAARG/MRO-Compat-0.13.tar.gz : install NO
DOY/Dist-CheckConflicts-0.11.tar.gz : install NO
DOY/Package-Stash-0.37.tar.gz : install NO
ILMARI/Devel-OverloadInfo-0.005.tar.gz : install NO
ZEFRAM/Module-Runtime-0.016.tar.gz : install NO
DROLSKY/Module-Implementation-0.09.tar.gz : install NO
RJBS/Data-OptList-0.110.tar.gz : install NO
ETHER/Class-Load-0.25.tar.gz : install NO
ETHER/Class-Load-XS-0.10.tar.gz : install NO
ETHER/Try-Tiny-0.30.tar.gz : install NO
DROLSKY/Devel-StackTrace-2.03.tar.gz : install NO
DOY/Eval-Closure-0.14.tar.gz : install NO
ETHER/Sub-Name-0.21.tar.gz : install NO
RGARCIA/Sub-Identify-0.14.tar.gz : install NO
FREW/Sub-Exporter-Progressive-0.001013.tar.gz: install NO
HAARG/Devel-GlobalDestruction-0.14.tar.gz : install NO
ETHER/Module-Runtime-Conflicts-0.003.tar.gz : install NO
DROLSKY/Package-DeprecationManager-0.17.tar.gz: install NO
DOY/Package-Stash-XS-0.28.tar.gz : install NO
ADAMK/Params-Util-1.07.tar.gz : install NO
ETHER/Moose-2.2011.tar.gz : install NO
Same command lines were used to install the one of perl module mentioned in the error message, but it still ran into error showed below
Reading '/home/Irischang/.cpan/Metadata'
Database was generated on Thu, 27 Dec 2018 06:54:12 GMT
Running install for module 'Module::Runtime'
Running make for Z/ZE/ZEFRAM/Module-Runtime-0.016.tar.gz
Checksum for /home/Irischang/.cpan/sources/authors/id/Z/ZE/ZEFRAM/Module-Runtime-0.016.tar.gz ok
Scanning cache /home/Irischang/.cpan/build for sizes............................................................................DONE
CPAN.pm: Building Z/ZE/ZEFRAM/Module-Runtime-0.016.tar.gz
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Module-Runtime' version '0.016'
Building Module-Runtime
ZEFRAM/Module-Runtime-0.016.tar.gz
./Build -- OK
Running Build test
t/cmn.t ............. ok
t/dependency.t ...... ok
t/import_error.t .... ok
t/ivmn.t ............ ok
t/ivms.t ............ ok
t/mnf.t ............. ok
t/pod_cvg.t ......... skipped: Test::Pod::Coverage not available
t/pod_syn.t ......... skipped: Test::Pod not available
t/rm.t .............. ok
t/taint.t ........... ok
t/um.t .............. ok
t/upo.t ............. ok
t/upo_overridden.t .. ok
All tests successful.
Files=13, Tests=365, 0 wallclock secs ( 0.09 usr 0.02 sys + 0.45 cusr 0.13 csys = 0.69 CPU)
Result: PASS
ZEFRAM/Module-Runtime-0.016.tar.gz
./Build test -- OK
Running Build install
[sudo] password for Irischang:
Irischang is not in the sudoers file. This incident will be reported.
ZEFRAM/Module-Runtime-0.016.tar.gz
sudo ./Build install -- NOT OK
Failed during this command:
ZEFRAM/Module-Runtime-0.016.tar.gz : install NO
Perl version is v5.16.3
Does anyone know how to fix it?
Thanks for any suggestion
