Question: JBrowse Error : HTTP 200 when fetching file
1
gravatar for aniket.bhagat
6 months ago by
aniket.bhagat20 wrote:

I'am trying to open index.html from JBrowse after running ./setup.sh. I have just loaded sample_data of volvox. But some of the tracks are not loading file. Showing "Error : HTTP 200 when fetching file"

Please help me in this Thank You.!

Screenshot : https://photos.app.goo.gl/NQsa5SJC5w7APfHk8

jbrowse http 200 flask • 376 views
ADD COMMENTlink modified 6 months ago • written 6 months ago by aniket.bhagat20
1

Tagging: cmdcolin

ADD REPLYlink written 6 months ago by genomax69k
3
gravatar for colindaven
6 months ago by
colindaven1.6k
Hannover Medical School
colindaven1.6k wrote:

The setup data should work, however, it looks like you are trying to run it on your local client machine using the file:/// protocol in the browser?

If that is true, try using the JBrowse-1.16.1-desktop-linux-x64.zip from the following site, it is likely more appropriate to your needs.

http://jbrowse.org/blog/

I use JBrowse on a server only, but the local version is attractive for some colleagues.

ADD COMMENTlink written 6 months ago by colindaven1.6k
2

+1 for this. You need to setup a web server, you cannot just double click index.html in your file explorer and have it work even if it appears to work for some very limited cases http://jbrowse.org/docs/faq.html#what-webserver-is-needed-for-jbrowse

And indeed, the desktop version is a good option also

ADD REPLYlink written 6 months ago by cmdcolin1.2k
2
gravatar for rajesh
6 months ago by
rajesh 60
India/Chandigarh/
rajesh 60 wrote:

First run perl bin/flatfile-to-json.pl programme with features and then run run generatename.pl. program Only after this results are displayed.

ADD COMMENTlink written 6 months ago by rajesh 60
2
gravatar for aniket.bhagat
6 months ago by
aniket.bhagat20 wrote:

Thank you everyone..

Actually i wanted to implement browse in Flask framework, and by just adding "JBrowse" folder in static directory of my app solved this problem.

Thanks again for your valuable responses.

ADD COMMENTlink written 6 months ago by aniket.bhagat20
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