Question: Should metagenome Bioproject contain SRA files?
gravatar for femtokot
19 months ago by
Saint Petersburg
femtokot0 wrote:


I would like to analyze data (Bacteria genome sequences) from a certain Bioproject Data Type Genome sequencing and assembly

I can download Assemblies. But I would like to work with raw reads to check the variability of a particular genome sequence in a population (groundwater metagenome).

Thus, I have a question: If somebody uploads metagenome assemblies to NCBI Bioproject - isn't it necessary to upload SRA?

Thank you for your help!

sequencing assembly • 422 views
ADD COMMENTlink written 19 months ago by femtokot0

afaik, not necessarily. Maybe you can still find somthing at the EBI?

ADD REPLYlink written 19 months ago by Carambakaracho2.2k

Thank you, will try to search there. But considering difficulties with genome assembling and new approaches what are released each year - isn't it worth to upload SRA - what if somebody else will assemble this data in the future?

ADD REPLYlink written 19 months ago by femtokot0
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