Question: Should metagenome Bioproject contain SRA files?
gravatar for femtokot
8 months ago by
Saint Petersburg
femtokot0 wrote:


I would like to analyze data (Bacteria genome sequences) from a certain Bioproject Data Type Genome sequencing and assembly

I can download Assemblies. But I would like to work with raw reads to check the variability of a particular genome sequence in a population (groundwater metagenome).

Thus, I have a question: If somebody uploads metagenome assemblies to NCBI Bioproject - isn't it necessary to upload SRA?

Thank you for your help!

sequencing assembly • 269 views
ADD COMMENTlink written 8 months ago by femtokot0

afaik, not necessarily. Maybe you can still find somthing at the EBI?

ADD REPLYlink written 8 months ago by Carambakaracho1.6k

Thank you, will try to search there. But considering difficulties with genome assembling and new approaches what are released each year - isn't it worth to upload SRA - what if somebody else will assemble this data in the future?

ADD REPLYlink written 8 months ago by femtokot0
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