Should metagenome Bioproject contain SRA files?

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5.3 years ago

femtokot • 0

Hi!

I would like to analyze data (Bacteria genome sequences) from a certain Bioproject Data Type Genome sequencing and assembly

I can download Assemblies. But I would like to work with raw reads to check the variability of a particular genome sequence in a population (groundwater metagenome).

Thus, I have a question: If somebody uploads metagenome assemblies to NCBI Bioproject - isn't it necessary to upload SRA?

Thank you for your help!

sequencing assembly • 984 views

ADD COMMENT • link 5.3 years ago by femtokot • 0

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afaik, not necessarily. Maybe you can still find somthing at the EBI?

ADD REPLY • link 5.3 years ago by Carambakaracho ★ 3.2k

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Thank you, will try to search there. But considering difficulties with genome assembling and new approaches what are released each year - isn't it worth to upload SRA - what if somebody else will assemble this data in the future?

ADD REPLY • link 5.3 years ago by femtokot • 0

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