Question

IGB Visualization for Depth Graph

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5.3 years ago

jpere716 ▴ 10

Hello,

I am having some difficulties visualizing my depth graph on the IGB software. Is there a way where I can visualize the entire chromosome while keeping the relative size of the depth graph on the chromosome. Most of the time the max that I can see is one portion of the depth graph, is there a way where I can maintain the size and view the data for the entire chromosome?

Thank you.

IGB • 1.3k views

ADD COMMENT • link updated 5.2 years ago by Nowlan Freese ▴ 860 • written 5.3 years ago by jpere716 ▴ 10

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Tagging: Mason Meyer

ADD REPLY • link 5.3 years ago by GenoMax 141k

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I have not much experience with IGB, but converting BAM coverage information to BigWig (https://deeptools.readthedocs.io/en/develop/) would solve similar problems for other major genome browsers like IGV and JBrowse.

ADD REPLY • link 5.2 years ago by Vitis ★ 2.5k

score 0 · Answer 1 · 2019-02-20

Hi jpere716,

You should be able to view the depth graph across the entire chromosome.

Can you tell me more about the issue you are having? Is the depth graph not loading across the entire chromosome, or is the top of the depth graph being cut off (the height of of the depth graph can be adjusted in the Graph tab by adjusting theY Axis Scale).

Nowlan