Question: How to download the .dat file of the UniProt Metazoa?
1
gravatar for Seq225
9 weeks ago by
Seq22590
Seq22590 wrote:

Hi,

I need the .dat file for the UniProt Metazoa. .dat has the EMBL format, which I need. But I don't see it here: https://www.uniprot.org/taxonomy/33208#

I can download the clade specific .dat files from here: https://www.uniprot.org/downloads. But I don't see the metazoan .dat file here.

Cab anybody help?

Cheers!!

ADD COMMENTlink modified 9 weeks ago by vkkodali980 • written 9 weeks ago by Seq22590

The UniProt flat file format is not the same as the EMBL format even if it is quite close. So you might run into issues if your software expects real EMBL.

ADD REPLYlink written 9 weeks ago by me690

Thank you very much.

ADD REPLYlink written 9 weeks ago by Seq22590
3
gravatar for vkkodali
9 weeks ago by
vkkodali980
United States
vkkodali980 wrote:

Go to this page: https://www.uniprot.org/uniprot/?query=reviewed:yes%20taxonomy:33208 and click on the Download button. If you choose Text from the drop-down list for Format, you will get the data in EMBL format.

ADD COMMENTlink written 9 weeks ago by vkkodali980

Thanks. That is what I did and it worked!

ADD REPLYlink written 9 weeks ago by Seq22590

Would you please answer my another question (if you know the answer) here? Protist in UniProt/NCBI taxonomic tree

Thanks!

ADD REPLYlink written 9 weeks ago by Seq22590

Don't forget to follow up on your threads.

Seq225 : If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work.
Upvote|Bookmark|Accept

Please do the same for your previous posts as well.

ADD REPLYlink written 9 weeks ago by genomax63k

Thank you very much. Done!

ADD REPLYlink written 9 weeks ago by Seq22590
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