A way to compare genomic sequences with SNPs with sequences for allelic variants to identify genotype for an individual using Plink

Question

[madeline.robinson]

Hello All,

I have text files for approximately 100 individuals that include SNPs for a gene and I have sequences for these same genetic positions for all of the known alleles for this particular gene. I need a way to compare the individual's sequence with the potential alleles and eliminate those that do not match. The goal is to narrow down the best way to do this. I have heard that Plink can accomplish this.

Any and all suggestions are much appreciated!