Hi! I've tried to use mirdeep2 package to miRseq analysis on Ubuntu. However I have no previous experience with seq analysis nor using Ubuntu surface. I followed to instruction provided by the developers, but when I wanted to use the mapper.pl module the following error message came up:
dirname: missing operand Try ‘dirname --help’ for more information. Please run the install.pl script first before using the miRDeep2 package The install script is located in so just do cd perl install.pl
than I've tried many times to run the install.pl and I've got this:
Building of /home/biochem-ubu/mirdeep2/essentials/bowtie-1.1.1/bowtie successful Compress::Zlib already installed, nothing to do ... Font::TTf already installed, nothing to do ... PDF::API2 already installed, nothing to do ... randfold was/is not installed properly RNAfold was/is not installed properly Please run the install.pl script again to check if everything is properly installed.
I saw there is a question with the similar problem, also I tried many alternative ways to fix it, but none of those worked. Any help would be appreciate!