Entering edit mode
5.3 years ago
milnerk3
•
0
Hello, I am using tBLASTn to collect sequences. What I would like to do is download a txt file containing the complete protein fasta sequences for the results of each search, and also possibly a txt file with the nucleotide CDS in fasta.
My options on the page are download a sequence dump containing the complete genome of each organism, or a file containing only the aligned portions of each protein (ie - missing the ends in most cases). Is there a way to get the full protein sequences without individually looking up each result?
See the answers here: how to download all the complete genomes for mycobacteria from NCBI? (you will need to modify as needed) or how to download all protein sequnces of a bacteria using ncbi ftp site?
You will need to get the
faafiles to get protein sequence.