I am newbie in Bioinformatics. I have problem in doing multiple sequence alignment of my genome sequences in megax tool. My genome size is 2.8 Mbp, when I tried aligning three sequences using muscle alignment option (default parameter) in megax.
I got the following error
Error Alignment failed: Muscle logfile didn't end properly, suggesting an unhandled exception.
I also tried doing multiple sequence alignment using other option like clustal W, but nothing worked as I expected. I have no idea how to rectify this error. Can someone help me to figure out this problem?