Question: R packages for applying Data mining or machine learning algorithms (SNV,RF, Neural Network) on RNAseq data
1
gravatar for rahel14350
23 months ago by
rahel1435030
United States
rahel1435030 wrote:

Dear all, I have a set of differentially expressed genes. I want to use Data mining/machine learning R packages to see which set or pairs of genes are more related to each other on the function (to classify them and find potential biomarkers)? Basically to apply SNV, random forest and neural network algorithms on RNAseq data. Could you please recommend me any R packages to do so?

Many thanks in advance, Rahel

ADD COMMENTlink modified 22 months ago • written 23 months ago by rahel1435030

Start with a pathway enrichment analysis.

ADD REPLYlink written 22 months ago by Arup Ghosh2.7k

Dear Arup,

Pathway analysis is not a part of Data mining/machine learning. I am looking for some packages to apply SNV or RF or Neural network algorithms on RNAseq data. Many thanks

ADD REPLYlink written 22 months ago by rahel1435030
0
gravatar for saanasum
22 months ago by
saanasum10
saanasum10 wrote:

Maybe this helps to find a possible package: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5633036/

ADD COMMENTlink written 22 months ago by saanasum10

Many thanks, this paper could be helpful! I am going to check it.

ADD REPLYlink written 22 months ago by rahel1435030
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