Question: Multiple sequence alignment tools for bigdata genomics ?
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gravatar for sunnykevin97
5 weeks ago by
sunnykevin9710
sunnykevin9710 wrote:

HI I'm looking for alignment tools which do multiple genome alignments and can able to handle big size WGS data ?

I had a job to do, In one go I'd like to align ~18 WGS datsets ?

If their any tools, can it generates MSA alignment in PHYLIP format or other format ?

suggestions please...

alignment genome • 160 views
ADD COMMENTlink written 5 weeks ago by sunnykevin9710

You should at least provide information about what the genome size is (and what format the data is in, e.g. finished chromosomes/contigs/pieces of DNA) when asking a "shrouded in mystery" question.

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by genomax62k

thanks, genome size ~ 8 GB each mostly all are draft genomes.

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by sunnykevin9710

As I mentioned in your other thread, I'm pretty confident that no such tools exist. At least, none that will generate a single contiguous alignment like you need.

ADD REPLYlink written 5 weeks ago by jrj.healey10k
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