Question: Error in reago installation
0
gravatar for athira112athira
4 weeks ago by
athira112athira0 wrote:

Hi, I am working with metagenomic data. I need a tool called reago for selecting rRNA from my metagenomic data. The source file downloaded from GitHub using bioconda channel(https://github.com/chengyuan/reago-1.1), but I get the following error during installation.

UnsatisfiableError: The following specifications were found to be in conflict:
  - reago
  - secretstorage
Use "conda info <package>" to see the dependencies for each package.

can anyone suggest a possible solution for this?

software error • 155 views
ADD COMMENTlink modified 4 weeks ago by h.mon23k • written 4 weeks ago by athira112athira0

Did you try the error message suggestion? Did you try conda info reago? What is its output?

Conda was experiencing disruptions due to internal updates yesterday, these should have been sorted out already. If you are lucky, the error you experienced was due to these updates, and if you try now it will work.

Alternatively, you may have set up incorrectly your channels. What is the output of conda config --show channels?

ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by h.mon23k

Also check if the tool you aim to install is python2 (or 3) and your conda environment is not matching. In this case you'll need to create a new conda environment with the appropriate python version.

ADD REPLYlink written 4 weeks ago by ATpoint13k

Thank you for the replay ,

I am using python 3.6.6 in linux os 14.04, conda 4.5.12

ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by athira112athira0

Thank you for the replay,

This is the output of conda info reago

reago 1.1 py27_1

file name : reago-1.1-py27_1.tar.bz2 name : reago version : 1.1 build string: py27_1 build number: 1 channel : https://conda.anaconda.org/bioconda/linux-64 size : 226 KB arch : x86_64 constrains : () md5 : 14a4fe98f3d61bfe36db16fa1d302555 platform : linux subdir : linux-64 url : https://conda.anaconda.org/bioconda/linux-64/reago-1.1-py27_1.tar.bz2 dependencies: genometools-genometools infernal ==1.1.1 networkx python 2.7*

reago 1.1 py27_0

file name : reago-1.1-py27_0.tar.bz2 name : reago version : 1.1 build string: py27_0 build number: 0 channel : https://conda.anaconda.org/bioconda/linux-64 size : 12 KB arch : x86_64 constrains : () license : MIT md5 : 178888145353b0cd6ae66e0fb4413a33 platform : linux subdir : linux-64 url : https://conda.anaconda.org/bioconda/linux-64/reago-1.1-py27_0.tar.bz2 dependencies: networkx python 2.7*

This is the output for conda config --show channels

channels: - conda-forge - bioconda - defaults

I also try to install a tool called csmiller/EMIRGE from Github (https://github.com/csmiller/EMIRGE.git) it also shows the same error during installation.

ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by athira112athira0
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