Question: PGDSPider VCF to BAYENV
gravatar for sonia.olaechea
8 weeks ago by
sonia.olaechea60 wrote:

Hi all,

I'm trying to convert my VCF file to Bayenv2 format with PGDSpider My problem is that it recognises a lot of SNPs as non-polymorphic (although they actually are...). I've realised that some of my SNPs have in the VCF REF column more than just one alelle (I guess they are insertions) and it's only those SNPs the ones that PGDSpider recognises as polymorphic.

I don't know if someone is facing the same problem, but I'd be glad to discuss what can be done, because I'd like to keep all those SNPs in my analysis. Thank you very much in advanced!

pgdspider bayenv2 vcf • 124 views
ADD COMMENTlink written 8 weeks ago by sonia.olaechea60
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1635 users visited in the last hour