Question: Normalise batch effects for Percent Spliced In (PSI) matrice
1
gravatar for ZheFrench
21 months ago by
ZheFrench300
France
ZheFrench300 wrote:

The exon-inclusion ratio, also known as percent spliced in (PSI), is a popular statistic for measuring alternative splicing events. How do you correct batch effects for matrice with this kind of values ?

For gene expression, you can use combat or sva, but for psi (value between -1;1) ? Any ideas ?

splicing combat sva • 573 views
ADD COMMENTlink modified 21 months ago • written 21 months ago by ZheFrench300

Any luck with this? I have PSI values as well, although they are all between 0 and 1. I need a way to estimate any number of unknown batch effects and produce a batch-corrected PSI matrix.

ADD REPLYlink written 6 months ago by eggerj0

Nope didn't find a solution for this one.Good Luck.

ADD REPLYlink written 6 months ago by ZheFrench300
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