Question: HGT analysis with comparem
gravatar for naiannegri
29 days ago by
naiannegri0 wrote:

Hey guys,

I'm trying to interpret the relevant data from the output command lgt_di and lgt_codon analysis from comparem

Where can I find the threshold value for Manhattan distance? Or for Deviations from mean? How can I say that the gene is obtained from lateral transfer?


comparem lgt hgt gene genome • 124 views
ADD COMMENTlink modified 29 days ago • written 29 days ago by naiannegri0
  1. What is lgt_di?
  2. What is lgt_codon?
  3. What is comparem?
  4. If you are wondering why I'm asking these questions, it's because I don't know what area you're looking for experts in, and the question has little context. If you had added relevant tags, people with subject matter expertise would know to check your post.
ADD REPLYlink written 29 days ago by RamRS20k

Looks like the CompareM package. HGT = Horizontal Gene Transfer

ADD REPLYlink modified 28 days ago • written 28 days ago by genomax62k
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