Question: HGT analysis with comparem
gravatar for naiannegri
13 months ago by
naiannegri0 wrote:

Hey guys,

I'm trying to interpret the relevant data from the output command lgt_di and lgt_codon analysis from comparem

Where can I find the threshold value for Manhattan distance? Or for Deviations from mean? How can I say that the gene is obtained from lateral transfer?


comparem lgt hgt gene genome • 272 views
ADD COMMENTlink modified 13 months ago • written 13 months ago by naiannegri0
  1. What is lgt_di?
  2. What is lgt_codon?
  3. What is comparem?
  4. If you are wondering why I'm asking these questions, it's because I don't know what area you're looking for experts in, and the question has little context. If you had added relevant tags, people with subject matter expertise would know to check your post.
ADD REPLYlink written 13 months ago by RamRS25k

Looks like the CompareM package. HGT = Horizontal Gene Transfer

ADD REPLYlink modified 13 months ago • written 13 months ago by genomax78k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1680 users visited in the last hour