Question: GATK Best Practices on Google Cloud
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gravatar for gdaly9000
3 months ago by
gdaly90000
gdaly90000 wrote:

Does anyone have experience actually running the GATK best practices on Google Cloud?

Even following their protocol exactly as defined here (https://cloud.google.com/genomics/docs/tutorials/gatk) and using the provided test dataset, the workflow consistently fails.

I was hoping to see if anyone has had success with the workflow, before I start doing more major debugging (error messages have been inconsistent, making the task non-trivial).

alignment • 184 views
ADD COMMENTlink written 3 months ago by gdaly90000
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