Visualize BEDPE file
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5.3 years ago
ste.lu ▴ 80

Hi All,

I have a bedpe file resulting from an HiC experiment. the structure is like this: Chr_bait \t Start_bait \t End_bait \t Chr_target \t Start_target \t End_target \t Notes \t Stat_value

Currently I am visualising them on IGV and they looks likes arches that link the 2 regions (Bait to Target). Do you know if there is a way to set the thickness of the arches proportional to the stats value? Or are there any other tools that allows to do it?

Thanks!

IGV BED HiC • 3.2k views
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Or are there any other tools that allows to do it?

circos ?

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I was trying to use Rcircos and BioCircos, But I think I can't zoom in as much as I want, in terms of chromosomal region. Is it different for Circos?

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