Question: RNA-Seq MAplot deviation problem in deseq2
0
gravatar for Grace_G
4 weeks ago by
Grace_G0
Grace_G0 wrote:

Here is part(sorry, it's already shows what I want reflect) of my maplot my plot

The relative distribution of all red point and black point are okay, what is different with normal MAplot is the global plot lower than we expected in general, I mean it's "roughly symmetry line" lower than y=0.

I checked my workflow, use res_diff, which get from res_diff <- results(dds2, pAdjustMethod = "BH")

I checked all what I can think of, still don't know what's wrong here?

Thanks for any view!

rna-seq next-gen • 134 views
ADD COMMENTlink modified 4 weeks ago • written 4 weeks ago by Grace_G0

Please add a proper image and not such a cropped one. It is unclear what you are asking without a proper plot.

ADD REPLYlink written 4 weeks ago by ATpoint13k

Thanks! The plot position of right one right one like this, "roughly symmetry line" at y=0!

ADD REPLYlink modified 29 days ago • written 29 days ago by Grace_G0
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