How map hundreds of chemical formulae to KEGG pathways simultaneously
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2.2 years ago
byy1889 • 0

When I go to KEGG LIGAND (https://www.kegg.jp/kegg/ligand.html#rdb) and use the "Search Compund" specifying "formula" (i.e. C12H24O11) I do obtain a result, which includes i..e the Galactose metabolism pathway.

It is great for one chemical formula. But now I have hundreds. Is there any suggestions on how to do this as batch search?

Many thanks!

chemical formulae KEEG • 443 views
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2.2 years ago

Do you have any other ID, like HMDB?

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Thanks for your reply. I have no any other ID except the "formula".

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You can search for the HMDB ID from the formula: http://www.hmdb.ca/

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Thank you very much!!!

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