Entering edit mode
5.3 years ago
Bioinfonext
▴
460
Hi,
I am running ITSx on HPC server just by calling module load
It is showing some error msg ....not sure How I can fix it?
I
TSx -i seqs.fna -o seqs-its-cleaned.fna -p /opt/apps/ITSx/1.0.11/ITSx_db/HMMs -t F --cpu 20 --preserve T --save_regions SSU,ITS1,5.8S,ITS2,LSU --minlen 150 --detailed_results "--reset T"
ITSx -- Identifies ITS sequences and extracts the ITS region
by Johan Bengtsson-Palme et al., University of Gothenburg
Version: 1.0.11
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Tue Jan 22 21:43:02 2019 : Preparing HMM database (should be quick)...
Tue Jan 22 21:43:02 2019 : Checking and handling input sequence data (should not take long)...
Tue Jan 22 21:43:13 2019 : Doing paralellised comparison to HMM database (this may take a long while)...
**Error: bad format, binary auxfiles, /opt/apps/ITSx/1.0.11/ITSx_db/HMMs/F.hmm:
binary auxfiles are in an outdated HMMER format (3/b); please hmmpress your HMM file again**
Tue Jan 22 21:43:13 2019 : Fungi analysis of main strand finished.
**Error: bad format, binary auxfiles, /opt/apps/ITSx/1.0.11/ITSx_db/HMMs/F.hmm:
binary auxfiles are in an outdated HMMER format (3/b); please hmmpress your HMM file again**
Tue Jan 22 21:43:13 2019 : Fungi analysis of complementary strand finished.
Tue Jan 22 21:43:13 2019 : All processes finished.
Tue Jan 22 21:43:13 2019 : Parallel HMM-scan finished.
Tue Jan 22 21:43:13 2019 : Analysing results of HMM-scan (this might take quite some time)...
Tue Jan 22 21:43:16 2019 : Extraction finished!
Looks like your software may not have been built properly. Contact your sysadmin and check with them.