Entering edit mode
4.4 years ago
JoeDoasi ▴ 10
I would like to know if there is a small NGS raw data that can be used for analysis on a private PC.
The aim is to evaluate my pipeline (alignment, variant calling, annotation) and see if all commands are working before moving to the HPC.
have a look at the European Nucleotide Archive for finding data that fits your needs. Maybe a sample of this study?
Along to @finswimmer's comment, to download from ENA Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA)
Thank you for your reply.
This is a good start. I will try it.
You may want to elaborate on:
I actually would like to know if there is clinical exome data available!
do you think clinical exome data will be exhaustive for the private PC?
Why not take data attached to the publication of your interest ?