Hi everyone. I am trying to use Platypus for variant calling. even though I have tried everything I could to fix it (moved htslib to usr/local, exported paths to it) I always got the following error. I deleted and reinstalled platypus and htslib as well. could you help me, please?
python Platypus.py callVariants --nCPU=3 --bamFiles=/home/nuketbilgen/kedigenom/fel9allignedminnos/minnos_felcat9aligned.bam --refFile=/home/nuketbilgen/feliscatus9/felCat9.fa output=/home/nuketbilgen/kedigenom/fel9allignedminnos/minnos9avariantcalls.vcf Traceback (most recent call last): File "Platypus.py", line 9, in <module> import runner File "/home/nuketbilgen/Platypus_0.8.1/runner.py", line 9, in <module> import variantcaller File "htslibWrapper.pxd", line 203, in init variantcaller (variantcaller.c:16971) ImportError: libhts.so.2: cannot open shared object file: No such file or directory