Question: juicer.sh problem !
0
gravatar for dimitrischat
10 months ago by
dimitrischat90
dimitrischat90 wrote:

Trying to run sample files from here: https://github.com/aidenlab/juicer/wiki/Installation , but it returns this problem:

(-: /home/app/Desktop/apps/Juicer/scripts/splits/HIC003_S2_L001_001.fastq.gz.sam created successfully.
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
***! Failure during chimera handling of /home/app/Desktop/apps/Juicer/scripts/splits/HIC003_S2_L001_001.fastq.gz

Any ideas?

rna-seq • 368 views
ADD COMMENTlink modified 9 months ago by Biostar ♦♦ 20 • written 10 months ago by dimitrischat90
4
gravatar for Gautier Richard
10 months ago by
MPI IE, Freiburg, Germany
Gautier Richard280 wrote:

Their github repository might be a better place to post this kind of issue:

https://github.com/aidenlab/juicer/issues

ADD COMMENTlink modified 10 months ago • written 10 months ago by Gautier Richard280
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