Question: Bowtie2 filter by alignment score
0
gravatar for biogirl04
6 months ago by
biogirl040
biogirl040 wrote:

Hi,

Is there a way I can get only reads with an alignment score of greater than -5 in bowtie2 alignment?

Thanks!

ADD COMMENTlink written 6 months ago by biogirl040

Are you referring to MAPQ?

ADD REPLYlink written 6 months ago by genomax70k
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