Question: PacBio consensus assembly quality value
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gravatar for philippe.leroy.2
9 months ago by
France/Toulouse/INRA
philippe.leroy.20 wrote:

Hello

I have sequenced a BAC clone with PacBio RSII To make the assembly I used Facon through pbbioconda and for polishing I used quiver

To have an estimation of the consensus quality I remap the original bam reads file against the consensus fasta file

How to estimate a mean quality value, in other world, a consensus Phred score for the base calls of the consensus ... :-)

Thank you very much in advance Philippe

assembly pacbio falcon qv quiver • 334 views
ADD COMMENTlink modified 9 months ago by finswimmer12k • written 9 months ago by philippe.leroy.20
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