Question: Converting HUGO ID to Entrez gene or Ensembl ID
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gravatar for skiesareforflying
20 months ago by
skiesareforflying20 wrote:

I have a list of HUGO IDs that I want to use with a couple of pathway analysis tools which do not take this format as input. I want to be able to convert a batch of these automatically but am not sure the best way to do this. Is there a good tool that I can use for this?

entrez gene id ensembl • 1.5k views
ADD COMMENTlink modified 20 months ago • written 20 months ago by skiesareforflying20
1

How many gene IDs have you got? If it's up to 200, you can use the Open Targets Platform batch search tool to get an enrichment of pathways from Reactome for your list of HGNC gene IDs. Check a previous post on the theme here in Biostars aka Open Targets batch search.

ADD REPLYlink written 20 months ago by Denise CS5.1k

There are so many tools you could use to do this, including the HGNC Biomart and Ensembl Biomart, Eutils/reutils, org.Hs.eg.db, so on. Have you tried searching online for HGNC ID -> Ensembl ID?

ADD REPLYlink modified 20 months ago • written 20 months ago by RamRS30k
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