novel miRNA identification from sequence

Question

[JulianC]

Hi everyone!

I'm looking for a tool that can allow me to predict novel miRNA from their sequences. I tried Mireap but I'm not able to provide the "map.txt" file since I have only the bam and sam from my alignment with Bowtie2. Thanks!!

[zhuanzhuanlee]

can u tell me how did you do ? I have the same quesition

Answer 1

[brettgao2018]

Check out the novel miRNA prediction module in sRNABench:

http://bioinfo2.ugr.es:8080/ceUGR/srnabench/

Answer 2

[Emilio Marmol]

You could try a pipeline we recently developed in our team. Paper is still not published though.

https://github.com/emarmolsanchez/eMIRNA

Answer 3

[khq5801]

Use UEA sRNA workbench - miRCAT