Question: conda Solving environment: failed
0
gravatar for esraesmeray1990
7 weeks ago by
esraesmeray199010 wrote:

Hi I am trying to install defuse and chimerascan using conda but everytime i am taking following errors:

    conda install -c dranew defuse

Solving environment: failed

UnsatisfiableError: The following specifications were found to be in conflict:
  - defuse -> r=3.3.2 -> _r-mutex=1[build=anacondar_1]
  - defuse -> r=3.3.2 -> r-base==3.3.2 -> pango=1.40 -> glib=2.50
  - defuse -> r=3.3.2 -> r-base==3.3.2 -> tk=8.5
  - mro-base_impl
Use "conda info <package>" to see the dependencies for each package.

And also for chimerascan tool:

conda install bioconductor-chimera
Solving environment: failed

UnsatisfiableError: The following specifications were found to be in conflict:
  - bioconductor-chimera -> bioconductor-genomicranges[version='>=1.13.3'] -> bioconductor-s4vectors[version='>=0.9.47'] -> r-base[version='>=3.4.1,<3.4.2.0a0'] -> _r-mutex=1[build=anacondar_1]
  - bioconductor-chimera -> bioconductor-genomicranges[version='>=1.13.3'] -> bioconductor-s4vectors[version='>=0.9.47'] -> r-base[version='>=3.4.1,<3.4.2.0a0'] -> pango[version='>=1.40.14,<1.41.0a0']
  - mro-base_impl
Use "conda info <package>" to see the dependencies for each package.

By the way İ already run the following commands:

esra@asus:~$ conda config --add channels 'conda-forge'
Warning: 'conda-forge' already in 'channels' list, moving to the top
esra@asus:~$ conda config --add channels https://conda.anaconda.org/dranew
Warning: 'https://conda.anaconda.org/dranew' already in 'channels' list, moving to the top
esra@asus:~$ conda config --add channels 'bioconda'
Warning: 'bioconda' already in 'channels' list, moving to the top
esra@asus:~$ conda config --add channels 'r'
Warning: 'r' already in 'channels' list, moving to the top
ADD COMMENTlink modified 7 weeks ago by Devon Ryan88k • written 7 weeks ago by esraesmeray199010
2
gravatar for Devon Ryan
7 weeks ago by
Devon Ryan88k
Freiburg, Germany
Devon Ryan88k wrote:

Do not use the r channel, that should be removed from your channels as it's using deprecated R versions. The order of your channels should be:

  • conda-forge
  • bioconda
  • defaults

You will then be able to install bioconductor-chimera. For defuse you'll again need to add -c conda-forge -c bioconda -c dranew.

ADD COMMENTlink written 7 weeks ago by Devon Ryan88k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1063 users visited in the last hour