Question: Perform maximum parsimony tree with bootsrapping with the option to save all the replicate trees
gravatar for jlsovaz
16 months ago by
jlsovaz0 wrote:


I am trying to create maximum parsimony trees from different nexus files with bootstrapping option. The problem is I would want to save all the replicates (trees) of the bootstrap analysis (for example, if I set 500 replicates, I would want to get the 500 trees as well as the consensus tree with the support values). Is it possible with any program (paup, mpboot, phylip...)?



ADD COMMENTlink modified 16 months ago by Jean-Karim Heriche22k • written 16 months ago by jlsovaz0
gravatar for Jean-Karim Heriche
16 months ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche22k wrote:

Check the R packages ape and and phangorn. Both have bootstrapping functions that return trees.

ADD COMMENTlink written 16 months ago by Jean-Karim Heriche22k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1705 users visited in the last hour