Perform maximum parsimony tree with bootsrapping with the option to save all the replicate trees
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2.2 years ago
jlsovaz • 0

Hello,

I am trying to create maximum parsimony trees from different nexus files with bootstrapping option. The problem is I would want to save all the replicates (trees) of the bootstrap analysis (for example, if I set 500 replicates, I would want to get the 500 trees as well as the consensus tree with the support values). Is it possible with any program (paup, mpboot, phylip...)?

Thanks,

Jose

paup phylip MPboot MP maximum parsimony • 619 views
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2.2 years ago

Check the R packages ape and and phangorn. Both have bootstrapping functions that return trees.

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