Question: Perform maximum parsimony tree with bootsrapping with the option to save all the replicate trees
gravatar for jlsovaz
9 months ago by
jlsovaz0 wrote:


I am trying to create maximum parsimony trees from different nexus files with bootstrapping option. The problem is I would want to save all the replicates (trees) of the bootstrap analysis (for example, if I set 500 replicates, I would want to get the 500 trees as well as the consensus tree with the support values). Is it possible with any program (paup, mpboot, phylip...)?



ADD COMMENTlink modified 9 months ago by Jean-Karim Heriche21k • written 9 months ago by jlsovaz0
gravatar for Jean-Karim Heriche
9 months ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche21k wrote:

Check the R packages ape and and phangorn. Both have bootstrapping functions that return trees.

ADD COMMENTlink written 9 months ago by Jean-Karim Heriche21k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2375 users visited in the last hour