Question: GTEx for brain data
0
gravatar for sana777munquad
10 months ago by
sana777munquad0 wrote:

How can I get brain tissue data from GTEx website.?Anyone can suggest me to solve this.

tissue • 453 views
ADD COMMENTlink modified 10 months ago by hubbardl0 • written 10 months ago by sana777munquad0
1

Do you want the raw data (BAM/Fastq) ? or meta data about the samples used ? or eQTL results ? You have all the information on its website

https://gtexportal.org/home/datasets

ADD REPLYlink modified 10 months ago • written 10 months ago by geek_y10k

yes I want raw data of brain

ADD REPLYlink written 10 months ago by sana777munquad0
0
gravatar for hubbardl
10 months ago by
hubbardl0
hubbardl0 wrote:

dbGaP by the sounds of it. From the GTEX site:

Due to the nature of our donor consent agreement, raw data and attributes which might be used to identify the donors are not publicly available on the GTEx Portal. You may apply for access to the data through dbGaP: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000424.v7.p2

Data available include: BAM files for RNA-Seq, Whole Exome Seq, and Whole Genome Seq

ADD COMMENTlink written 10 months ago by hubbardl0
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