I have done analysis of QC using FastQC for my PacBio data. I am wondering whether should I clean my data by quality criterion or minimum length of read. Those data are very poor (PacBio). Do you know any recommendation how to clean those data? For Illumina I used to use Trimmomatic, CutAdapt and TrimGalore, but I have no idea how to pre-process PacBio data. I think I should remove reads shorter than 50 bp, but if you have any other recommendation for those purposes, let me know.