Question: how to install survivor with conda
0
gravatar for c.clarido
6 months ago by
c.clarido50
Netherlands/Rotterdam/Leiden University (Applied Science)
c.clarido50 wrote:

Hello community,

I'm kinda new with installing packages in conda. So I am trying to install the [survivor][1] and I tried both:

  1. conda install -c bioconda survivor
  2. conda install -c bioconda/label/cf201901 survivor

I get: PackagesNotFoundError: The following packages are not available from current channels:

So what is the name of the channel and how do I activate ?

[1] https://anaconda.org/bioconda/survivor

instal conda survivor channel • 218 views
ADD COMMENTlink modified 6 months ago by Devon Ryan91k • written 6 months ago by c.clarido50

It's in the normal bioconda channel.

$ conda search survivor
Loading channels: done
# Name                  Version           Build  Channel             
survivor                  1.0.0               0  bioconda            
survivor                  1.0.3               0  bioconda            
survivor                  1.0.3      h2d50403_1  bioconda            
survivor                  1.0.5      h2d50403_1  bioconda
ADD REPLYlink modified 6 months ago • written 6 months ago by Devon Ryan91k

I get this:

$ conda search survivor
Loading channels: done

PackagesNotFoundError: The following packages are not available from current channels:

  - survivor

Current channels:

  - https://conda.anaconda.org/bioconda/osx-64
  - https://conda.anaconda.org/bioconda/noarch
  - https://repo.anaconda.com/pkgs/main/osx-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/free/osx-64
  - https://repo.anaconda.com/pkgs/free/noarch
  - https://repo.anaconda.com/pkgs/r/osx-64
  - https://repo.anaconda.com/pkgs/r/noarch
  - https://repo.anaconda.com/pkgs/pro/osx-64
  - https://repo.anaconda.com/pkgs/pro/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.
ADD REPLYlink written 6 months ago by c.clarido50
1
gravatar for Devon Ryan
6 months ago by
Devon Ryan91k
Freiburg, Germany
Devon Ryan91k wrote:

You left out the important caveat that you're using a Mac. Survivor isn't available for OSX.

ADD COMMENTlink written 6 months ago by Devon Ryan91k
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