Question: Question : platanus assemble error " File not open "
0
gravatar for mireiya.ryo
20 months ago by
mireiya.ryo0 wrote:

Hi. I'm student of graduate school of Japan.

I'm assembling genome of Angiosperms by using DDBJ Super computer system.

I chose " platanus " for assembling software, but I have in trouble of ERROR.


Error(1): File not open exception!!
/home/silv-higuchi/platanus_assemble/test_1.fq
 is not open!!

command is as follows.


./platanus assemble -f /home/silv-higuchi/platanus_assemble/test_1.fq
 /home/silv-higuchi/platanus_assemble/test_2.fq
 /home/silv-higuchi/platanus_assemble/test2_1.fq
 /home/silv-higuchi/platanus_assemble/test2_2.fq
 /home/silv-higuchi/platanus_assemble/test3_1.fq
 /home/silv-higuchi/platanus_assemble/test3_2.fq

Anyone has good idea? Please help.

ADD COMMENTlink modified 19 months ago by finswimmer13k • written 20 months ago by mireiya.ryo0
1

Are you translating the error message from a different language? Can you check if you have read access to the test1.fq file?

ADD REPLYlink written 19 months ago by RamRS30k
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