Question: Question : platanus assemble error " File not open "
0
gravatar for mireiya.ryo
9 months ago by
mireiya.ryo0 wrote:

Hi. I'm student of graduate school of Japan.

I'm assembling genome of Angiosperms by using DDBJ Super computer system.

I chose " platanus " for assembling software, but I have in trouble of ERROR.


Error(1): File not open exception!!
/home/silv-higuchi/platanus_assemble/test_1.fq
 is not open!!

command is as follows.


./platanus assemble -f /home/silv-higuchi/platanus_assemble/test_1.fq
 /home/silv-higuchi/platanus_assemble/test_2.fq
 /home/silv-higuchi/platanus_assemble/test2_1.fq
 /home/silv-higuchi/platanus_assemble/test2_2.fq
 /home/silv-higuchi/platanus_assemble/test3_1.fq
 /home/silv-higuchi/platanus_assemble/test3_2.fq

Anyone has good idea? Please help.

ADD COMMENTlink modified 9 months ago by finswimmer12k • written 9 months ago by mireiya.ryo0
1

Are you translating the error message from a different language? Can you check if you have read access to the test1.fq file?

ADD REPLYlink written 9 months ago by RamRS24k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1836 users visited in the last hour