Question: How to get correlation coefficient value between the genes in the WGCNA module network?
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gravatar for Vasu
16 months ago by
Vasu430
Vasu430 wrote:

Hello,

With my dataset 88 tumor and 70 normal samples with 30k protein coding genes and lncRNAs. I have used WGCNA for co-expression network construction.

With WGCNA, I got 30 modules. It looks like below:

Modules

I'm interested in brown module and how I can get correlation coefficient value of all the genes and lncRNAs present in that module?

Any help is appreciated.

ADD COMMENTlink written 16 months ago by Vasu430

can anyone tell me how I can get the correlation coefficient and corresponding pvalues for each gene pair (lncRNA and mRNA) with WGCNA?

ADD REPLYlink written 16 months ago by Vasu430

have you found the solution?

ADD REPLYlink written 4 months ago by grant.hovhannisyan1.9k
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