Question: How to get correlation coefficient value between the genes in the WGCNA module network?
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gravatar for Vasu
8 months ago by
Vasu410
Vasu410 wrote:

Hello,

With my dataset 88 tumor and 70 normal samples with 30k protein coding genes and lncRNAs. I have used WGCNA for co-expression network construction.

With WGCNA, I got 30 modules. It looks like below:

Modules

I'm interested in brown module and how I can get correlation coefficient value of all the genes and lncRNAs present in that module?

Any help is appreciated.

ADD COMMENTlink written 8 months ago by Vasu410

can anyone tell me how I can get the correlation coefficient and corresponding pvalues for each gene pair (lncRNA and mRNA) with WGCNA?

ADD REPLYlink written 8 months ago by Vasu410
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