Question: Metagenomics raw data to develop pipeline
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gravatar for shuksi1984
6 months ago by
shuksi198450
shuksi198450 wrote:

I want to build metagenomics pipeline. To start with, need raw data. How to identify and get raw data for bacterial taxaonomy, phylogenetic analysis, and resistance gene identification? I believe for taxonomic classification and phylogenetic analysis, the raw data will have reads from multiple bacterial species whereas for resistance gene identification the raw data can have reads from single or multiple bacterial strain.

sequencing next-gen genome • 254 views
ADD COMMENTlink modified 6 months ago by 5heikki8.4k • written 6 months ago by shuksi198450
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gravatar for 5heikki
6 months ago by
5heikki8.4k
Finland
5heikki8.4k wrote:

You can download metagenomes from e.g. https://www.mg-rast.org/

ADD COMMENTlink written 6 months ago by 5heikki8.4k
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