Question: Metagenomics raw data to develop pipeline
0
gravatar for shuksi1984
19 months ago by
shuksi198460
shuksi198460 wrote:

I want to build metagenomics pipeline. To start with, need raw data. How to identify and get raw data for bacterial taxaonomy, phylogenetic analysis, and resistance gene identification? I believe for taxonomic classification and phylogenetic analysis, the raw data will have reads from multiple bacterial species whereas for resistance gene identification the raw data can have reads from single or multiple bacterial strain.

sequencing next-gen genome • 632 views
ADD COMMENTlink modified 19 months ago by 5heikki9.0k • written 19 months ago by shuksi198460
0
gravatar for 5heikki
19 months ago by
5heikki9.0k
Finland
5heikki9.0k wrote:

You can download metagenomes from e.g. https://www.mg-rast.org/

ADD COMMENTlink written 19 months ago by 5heikki9.0k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1665 users visited in the last hour