Question: Metagenomics raw data to develop pipeline
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gravatar for shuksi1984
14 days ago by
shuksi198440
shuksi198440 wrote:

I want to build metagenomics pipeline. To start with, need raw data. How to identify and get raw data for bacterial taxaonomy, phylogenetic analysis, and resistance gene identification? I believe for taxonomic classification and phylogenetic analysis, the raw data will have reads from multiple bacterial species whereas for resistance gene identification the raw data can have reads from single or multiple bacterial strain.

sequencing next-gen genome • 66 views
ADD COMMENTlink modified 14 days ago by 5heikki8.1k • written 14 days ago by shuksi198440
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gravatar for 5heikki
14 days ago by
5heikki8.1k
Finland
5heikki8.1k wrote:

You can download metagenomes from e.g. https://www.mg-rast.org/

ADD COMMENTlink written 14 days ago by 5heikki8.1k
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