Question: genie3 for lncRNAs and mRNAs co-expression
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gravatar for Sam
10 months ago by
Sam140
Sam140 wrote:

Dear All

I'm going to use genie3 package for lncRNAs and mRNAs co-expression analysis, can I input just DE mRNAs and DE lncRNAs in this package to differential co-expression analysis?

Thanks

ADD COMMENTlink written 10 months ago by Sam140

Instead of using only DE lncRNAs and DE mRNAs, you should input all the mRNAs and lncRNAs with some filtering like removing genes with low expression.

You can check the WGCNA R package for Co-expression network analysis.

ADD REPLYlink written 10 months ago by Biologist190
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